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#760
There are two ways to use the MCT to update a machine, the first is to use its 'Update this PC now' option. That works in a similar way to letting Windows Update do the work and is generally no faster. It was this method that I suspect you tried.
The second way is to take the MCT's option to 'create media for another PC' and make an ISO file. Then mount the ISO and run the Setup.exe you'll find there to begin the upgrade. That is the fastest way to perform a feature update, but you should only use it if the machine has been offered the 2004 update in Windows Update. Doing so before you see it offered bypasses any checks for known blocking issues.