FlashBoot Pro can create bootable clone of any version of Windows starting from 8.1.
Also it can re-clone the external USB windows system back to use on the standard internal HDD/SSD.

OK, I'm glad to see that my advice helped you.

Emergency Boot Kit demo is not time limited, so you can use it to identify similar boot problems in the future.

In general, arrival of bad blocks...

Essential part is on the first screenshot:

"Failed to read from file L:\Windows\System32\config\SYSTEM: Input/output error.
Consider manual recovery from backup copy...

This error message looks like reference to your C: partition (or system reserved partiton, or both) is broken in the BCD registry hive. Either of these partitions have moved, now you have a dangling...