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#11
Haven't been to work yet (its 1pm Friday here and I don't star until 3)
I will try both those when I get there (but I am pretty sure that the System Disk C: is GPT because that is what it says when I look at the drives in Macrium.
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OK so here are the results
If I unplug the D: drive, the computer boots up normally (no "Preparing to Repair" screen)
Shut down, plug it back in and start, and the problem appears again.
Diskpart List Disk results
NOTE:
Disk 1 is C: drive.... I've never seen this before, its usually Disk 0.
Disk 2 is a permanently attached 2TB USB HDD
However, this is what I believe might be the problem
The EFI System partition still exists on Disk 0, and I'm betting that its trying to use that to boot to the old system that used be in the 500GB section of Disk 0, not finding it, it briefly tries to repair the system then move on to the "repair screen".
If this is the case, is it possible to delete these? Right clicking either of them shows all the options greyed out except "help".