New
#81
Finally fixed it properly. I had managed to get it so all I was missing was the settings from the new settings app so I had another think and tried something I had done before, but that hadn't worked at the time (when I still had the 'we are getting search ready' message and was missing all of the settings and entries from the old control panel as well as the settings app) - I deleted and rebuilt the index using the 'rebuild' button in Indexing options - Advanced.
It went through re-indexing and now I seem to have everything finally - docs, apps, control panel settings, 'new' settings app settings, web search and Windows store apps.
Only took a week :)