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#1
Have you tried go to settings - Personalisation - Taskbar - select which icons appear on the the taskbar
R-click icon/ check 'Settings' on Emisoft for 'notification' options. May be one to minimized to system tray or taskbar.
I would run two fixes. Rebuild Icon Cache and Reset Notification Area/
Rebuild Icon Cache in Windows 10
Reset Notification Area Icons in Windows 10
Wait for reboot prompt to appear and don't close the command window until you see the prompt.
Seems to be a long standing problem in another of their products:
Taskbar icon disappearing randomly - Emsisoft Anti-Malware Home - Emsisoft Support Forums
More recently:
EIS icon disappears from Win 10 notification area - Emsisoft Anti-Malware Home - Emsisoft Support Forums
Maybe try launching from an elevated shortcut?