Glad you got it sorted out. Usually, one can fix these things if one keeps at it, and keeps trying. Your solution (a refresh) involves some extra work -- namely, for resinstalling applications and re-applying settings and preferences -- but it did take care of your issue. Thanks also for reporting what solution worked for you: that's how other members and forum thread readers can learn, too.
--Ed--

PS: Please also mark this thread "solved" by clicking the green checkmark labeled "Solved" in a new thread, or while editing an older one. Thanks again!